I recently submitted a patch for Sparkle+ to deal with a similar situation. It can be annoying to get an alert about a new version when you are working. A new version is not a “drop everything and deal with this now” type of alert. With this patch, when a new update is found, it will check the user’s idle time and hold off showing the panel until a certain amount of time has elapsed. This minimizes the chance of the user being in the middle of something when the alert comes up.